As a physician-scientist, he was interested in translational medicine, specifically in neurobiology and cognitive neuroscience. As the chief of the LIMMIT lab, he worked with a group of researchers interested in probing into the homogenous subtypes of clinical functioning and the subjective experience of subjects with a typical development. As the scientist responsible for the MolecularCog(G) of the SalivaTec lab, he grew knowledge of biomarker research and molecular approaches and techniques for cognitive function profiling. Thus, he became intrinsically interested in omics sciences and studied multiple techniques in molecular biology derived from proteomics, specifically (a) for the probing of the full protein profile and (b) for the multiplexed simultaneous immune detection and quantification of the neuropeptidic and neuroinflammatory response. As requisite for understanding the acquired data, he developed the motivation to endorse the learning of bioinformatic tools used (1) for the integrative analysis of systems biology and (2) for creating classifiers for predictive modeling in health stratification, diagnosis, and prognosis. This screening strategy made possible the acquisition of an H2020 Corbel Grant by the research group he integrates to study patients with atypical child development. This grant aims (i) to permit the integration of multiple clinical and molecular databases for a posteriori analysis of ontologic and nosologic co-expression networks and (ii) to offer data-mining solutions for early screening, molecular stratification, and follow-up of a neurodevelopmental disorder. Concomitantly, as a resident and therapeutic responsible in child psychiatry he attained clinical knowledge in neurodevelopmental disorders, developmental disabilities and psychopedagogy. As milestones were achieved, he developed different neuroscientific applications, tools, and technologies to better understand neuropsychiatric and mental health stratification. Hence, for instance, he, and his supervisors, have developed a graphical user interface toolbox for (a) data exploration/visualization and (b) algorithms' development, aiming at clustering clinical and physiologic strata necessary to personalized medicine. Likewise, as another example, he and his supervisors have contributed to authoring an educational neuroscience center composed of diverse brain-computer interface training protocols for neuroliteracy, which resulted from a university partnership of biophysics, biomedical engineering, and computer science.

Besides, he is an author and member of different NGOs on worldwide humanitarian projects. When he is not working, he optimistically aspires to be an unskilled musician, an unsuccessful artist, a quasi-talent, and an almost regular meditation and yoga practitioner.

• Biology of Cognition
• Brain-Computer and Neurofeedback Interfaces
• Child and Adolescent Psychiatry and Psychotherapy
• Cognitive
• Molecular and Systems Neuroscience and Neurobiology
• Computational Biomedicine
• Data Mining and Machine Learning
• Education and Pedagogy
• Developmental Disability
• Mental Health
• Multiomics and Proteomic Systems Biology
• Neurophenomenology
• Neurodevelopmental Diseases
• Psychometrics
• Psychophysiology and Neurophysiology of Self
• Social Neuroscience

• Martins, J. E. (2013). Clinical and Neuroscientific Perspectives of ADHD. MD Thesis in Medicine, Faculty of Medical Sciences, NOVA University of Lisbon, Portugal. doi : 10.5281/zenodo.10085141; Retrieved from https://prezi.com/view/YmYtrxLFvjKOK4VmH9e6/
• Martins, J. E. (2013). Medical Clinical Internship Thesis. Faculty of Medicine, NOVA University of Lisbon, June; Retrieved from http://www.jorgeemanuelmartins.org/integrated-master-degree-in-medicine-thesis.html
• Re, T., Ventura, C., Vitiello, G., Simoes, M., Martins, J. E. (2015). Transcultural Perspective on Consciousness: a bridge between Anthropology, Medicine and Physics. Cosmos and History: The Journal of Natural and Social Philosophy, 11 (2), 228-241. Retrieved from https://cosmosandhistory.org/index.php/journal/article/view/502/841
• Re, T., Palma, J., Martins, J. E., Simoes, M., (2016). Transcultural Perspective on Consciousness: Traditional Use of Ayahuasca in Psychiatry in the 21st Century in the Western World. Cosmos and History: The Journal of Natural and Social Philosophy, 12 (2), 237-249. Retrieved from http://cosmosandhistory.org/index.php/journal/article/view/561/911
• Martins, J. E., Simoes, M., Ferreira, H., Tavares, V., Brito, J., Carvalho, L. X., Carvalho, E. N., Castelo-Branco, M. (2016a). Selfreflexive consciousness: a model for the experimental use of neurofeedback in sensorial immersion in a center for consciousness knowledge. Experimental Pathology and Health Sciences: Research, Clinics, Teaching and Society, 8 (1): 55-58. doi: 10.5281/zenodo.10083669; Retrieved from https://www.researchgate.net/publication/303894231_A_state_of_self_reflexive_flow_and_trait_of_consciousness_a_model_for_the_experimental_use_of_hypnosis_and_neurofeedback_in_sensorial_immersion_in_a_centre_for_consciousness_knowledge
• Martins, J. E., Simoes, M., Rosa, N., D'Alimonte, D., Mendes, V. M., Correia, M. J., Barros, M., Manadas, B. (2016b). Eudaemonia as a self state and trait of consciousness: saliva molecular biomarkers - a brief revision. Experimental Pathology and Health Sciences: Research, Clinics, Teaching and Society, 8 (1): 51-54. doi: 10.5281/zenodo.10084019; Retrieved from https://ciencia.ucp.pt/pt/publications/happiness-as-a-self-state-and-trait-of-consciousness-clinical-hyp; https://www.researchgate.net/publication/303894086_Eudaemonia_as_a_self_state_and_trait_of_consciousness_clinical_hypnosis_and_saliva_molecular_biomarkers_-_a_brief_revision
• Sousa, S., Martins, J. E., Rosa, N., Barros, M., & Correia, M. J. (2016a). # 097. Presenca de genes de resistencia a antibioticos na cavidade oral: uma revisao sistematica. Revista Portuguesa de Estomatologia, Medicina Dentaria e Cirurgia Maxilofacial, 57, 39-40. doi: 10.1016/j.rpemd.2016.10.095; Retrieved from https://www.sciencedirect.com/science/article/pii/S1646289016301339; https://www.academia.edu/112622592/_097_Presen%C3%A7a_de_genes_de_resist%C3%AAncia_a_antibi%C3%B3ticos_na_cavidade_oral_uma_revis%C3%A3o_sistem%C3%A1tica?source=swp_share
• Sousa, S., Martins, J. E., Martins, A., Rosa, N., Santos, L., Correia, M. J., Barros, M. (2016). Salivary Diagnosis: miRNA’s new directions. In 2º Simpósio da Ciência e Tecnoloigia da Vida e da Saúde, Porto, September. doi: 10.13140/RG.2.2.13726.54080; Retrieved from https://repositorio.ucp.pt/handle/10400.14/34619
• Martins, J. E., Sousa, S., Simoes, J. F., Hipolito, I., D’Alimonte, D., Marques, T., Rosa, N., Correia, M. J., Simoes, M., Barros, M. (2016c). Molecular Cognition Group Strategy. In 2º Simpósio da Ciência e Tecnoloigia da Vida e da Saúde, Porto, September. doi: 10.13140/RG.2.2.27473.92002; Retrieved from https://repositorio.ucp.pt/handle/10400.14/34612
• Fernandes, M., Esteves, E., Dulyanska, Y., Martins, J. E., Sousa, S., Rosa, N., Correia, M. J., Barros, M. (2016). Actividade Senior: SalivaTec´s role. In 2º Simpósio da Ciência e Tecnoloigia da Vida e da Saúde, Porto, September. doi: 10.13140/RG.2.2.20763.03366; Retrieved from https://ciencia.ucp.pt/en/publications/atividade-s%C3%A9nior-salivatecsrole
• Esteves, E., Martins, J. E., Fernandes, M., Dulyanska, Y., Sousa, S., Rosa, N., Correia, M. J., Barros, M. (2016). Diabetic wound treatment with vegetal collagenase?. In 2º Simpósio da Ciência e Tecnoloigia da Vida e da Saúde, Porto, September. doi: 10.13140/RG.2.2.34184.80648; Retrieved from https://ciencia.ucp.pt/en/publications/diabetic-wound-treatment-withvegetal-collagenase
• Sousa, S., Martins, J. E., Rosa, N., Barros, M., & Correia, M. J. (2016b). Presenca de genes de resistencia a antibioticos na cavidade oral: uma revisao sistematica. In XXXVI Congresso Anual da SPEMD, Viseu, September. Retrieved from https://www.researchgate.net/publication/308631941_Presenca_de_genes_de_resistencia_a_antibioticos_na_cavidade_oral_uma_revisao_sistematica; https://www.academia.edu/112622592/_097_Presen%C3%A7a_de_genes_de_resist%C3%AAncia_a_antibi%C3%B3ticos_na_cavidade_oral_uma_revis%C3%A3o_sistem%C3%A1tica?source=swp_share
• Saavedra, M., Fernandes, M, Sousa, S., Silva., A., Martins, J. E., Esteves, E., Rosa, N., Correia, M. J., Barros, M. (2017). Salivary protein profile as a tool for patient stratification in peri-implantitis. In ITI World Symposium 2017, Basel, May. doi: 10.13140/RG.2.2.17174.34883; Retrieved from https://ciencia.ucp.pt/en/publications/salivary-protein-profile-as-a-toolfor-patient-stratification-in-
• Hipolito, I., & Martins, J. E. (2017). Mind-life continuity: A qualitative study of conscious experience. Progress in Biophysics andMolecular Biology, 131:432-444. doi: 10.1016/j.pbiomolbio.2017.09.004; Retrieved from https://www.sciencedirect.com/science/article/pii/S0079610717301165
• Martins, J. E., et al. (2019). 7p Duplication Syndrome Phenotype: Genes to cognition, behavior to proteins (ID7171). PSY-Kongress 2019, SSPPEA, Bern, September. doi : 10.5281/zenodo.10085320; Retrieved from https://doi.org/10.5281/zenodo.10085321; https://organizers-congress.org/frontend/index.php?page_id=5653&lid=81; https://tinyurl.com/PSYkongress2019Poster
• Martins, J. E., Simoes, M. (2019). Subjective Experience: a model for the experimental use of neurofeedback in sensorial immersion in a center for consciousness knowledge. In Coimbra, F. (2019). Book of Abstracts. II International Symposium - Archaeology, Archaeoacoustics and Neuroscience: What kind of relation?; Retrieved from https://www.researchgate.net/publication/334884012_Book_of_Abstracts_II_International_Symposium_-_Archaeology_Archaeoacoustics_and_Neuroscience_What_kind_of_relation
• Martins, J. E. (2021). Molecular Profiling In Neurotypical Young Adults: (i) mental health stratification and (ii) characterization of the neuronal-salivary proteome and neuropeptide/neuroimmune response. PhD Thesis in Neuroscience, University of Lisbon, Faculty of Medicine, Portugal
• Leprodhomme, C., Apetrei, D., Scariati, E., Carvajal, J., Grau, Jean-Marie, Martins, J. E., Servettaz, D., Kosel, M. (2021). La Transition: Un Levier Pour La Qualite Des Soins Et La Qualite De Vie Du Patient En Situation D’handicap. Laureat : Prix « handicap » 2021, Service de qualite des soins, Direction medicale et qualite, Hopitaux universitaires de Geneve, Geneve, Suisse ; doi : 10.5281/zenodo.10088808; Retrieved from https://doi.org/10.5281/zenodo.10088808
• Martins, J. E., Simoes, J., Barros, M., & Simoes, M. (2022). Pre-Molecular Assessment of Self-Processes in Neurotypical Subjects Using a Single Cognitive Behavioral Intervention Evoking Autobiographical Memory. Behavioral Sciences, 12(10), 381. doi: 10.3390/bs12100381; Retrieved from https://www.mdpi.com/2076-328X/12/10/381
• Martins, J. E., D’Alimonte, D., Simoes, J., Sousa, S., Esteves, E., Rosa, N., ... & Barros, M. (2023). MODeLING.Vis: A Graphical User Interface Toolbox Developed for Machine Learning and Pattern Recognition of Biomolecular Data. Symmetry, 15(1), 42. doi: 10.3390/sym15010042; Retrieved from https://www.mdpi.com/2073-8994/15/1/42/htm; https://ciencia.ucp.pt/ws/portalfiles/portal/59523883/symmetry_15_00042_v2.pdf

• Hipolito, I., Martins, J. E. (2018). A “Second-Person” Model to Anomalous Social Cognition. In: Hipolito, I., Goncalves J., Pereira J. (eds) Schizophrenia and Common Sense. Studies in Brain and Mind, vol 12. Springer, Cham. doi: 10.1007/978-3-319-73993-9_4; Retrieved from https://link.springer.com/chapter/10.1007/978-3-319-73993-9_4
• Pacheco, A., Martins, J. E., Simoes, M. (2019). Mental health promotion in the community: conceptual analysis. Cadernos de Saúde, 2019, vol. 11, no 2, p. 27-36. doi: 10.34632/cadernosdesaude.2019.5166; Retrieved from https://revistas

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